The lab

Gerald Quon, Principal Investigator

Gerald Quon is a Canadi(eh)n Assistant Professor in the Department of Molecular and Cellular Biology at UC Davis. Previously, he was a postdoc at MIT and the Broad Institute, building models to predict the mechanism of action of genetic variants associated with obesity and Alzheimer’s Disease. He completed his PhD in Computer Science at the University of Toronto under Quaid Morris, where his research focused on developing models to deconvolute gene expression profiles of heterogeneous cell populations, in order to improve personalized medicine in cancer. He also holds a MSc in Biochemistry from the University of Toronto, as well as an undergraduate degree in Computer Science from the University of Waterloo.

Nelson_Johansen

Nelson Johansen, CS PhD student

Nelson is a PhD student in the Department of Computer Science. His current research interests include learning the relationship between gene expression, physiological and morphological properties defining cell state in order to identify abnormalities underlying complex diseases. His previous research focused on the integration of scRNA data from multiple studies and differential expression at the resolution of individual cells. Outside the lab, he enjoys growing a seasonal garden and spending time outdoors with Freyja.

Ruoxin Li, Biostats PhD student

Rita is a Ph.D student in Biostatistics. She has a keen interest in developing statistical tools, in particular generative models, to reveal and interpret novel biological insight from genomics data. In her personal time, she also enjoys watercolor, digital illustration and hiking.

 

Yongin Choi, BME PhD student

Yongin is a PhD student in the Biomedical Engineering department, and joined the lab in Spring 2018. His current project focuses on learning the key regulatory mechanism responsible for change and maintenance of cell state. In his spare time, he enjoys playing tennis, board games, and eating great food that others have prepared for him.

Hongru Hu, IGG PhD student

Hongru is a PhD student in the IGG program. He has experience in applying neurogenetic and genomic tools to discover the function of neural circuits underlying animal behaviors and would love to develop computational methods for bridging the genotype-phenotype gap to answer specific biological questions. He likes exploring national parks in his spare time.

Lacey Walker, IGG PhD student

Lacey is a PhD student in the IGG program whose past work as a public health bioinformaticist has focused on metagenomics and antimicrobial resistant bacteria. She is interested in developing computational tools for integrative analysis that connects variations in genetics and gene expression to cellular phenotypes. She enjoys reading, volunteering, and trivia.

Xinzhe (Jason) Li, Junior Specialist

Xinzhe is a recent graduate from the Cell Biology program of UC Davis who enjoys exploring the use of machine learning for solving biological problems. He loves traveling the world and spending time with friends and family. Cooking and martial art training might be his favorite activities when he occasionally has a life outside of school and lab.

Nasim Zeighami, G&G undergrad

Nasim is a fourth year undergraduate student majoring in Genetics and Genomics, and is a part of the University Honors Program. She is excited to apply various computational methods to human genetics research in order to analyze genomic variants of specific disorders. In her free time, she enjoys being outdoors, camping, hiking, baking, and spending time with friends/family.

Ryan Buchner, G&G undergrad

Ryan is a 4th year undergraduate Genetics-Genomics and Data Science student with interest in applying statistical methods to biological data sets. In his free time, he likes to be outside as much as possible, whether that be camping, gardening, or playing sports.

Soumil Shekdar, CS undergrad

Soumil is a junior studying Computer Science & Engineering at UC Davis. He loves the logical and enabling nature of programming, but at the same time, hopes to impact the world more directly, so his interests lie in the applications of Computer Science to Healthcare, Drug Discovery, and Biology. By developing machine learning models that reason and are interpretable, he hopes to facilitate cooperative work between people and AI which is needed to solve abstract problems.

Wesley Tat, Stats undergrad

Wes is a second-year student majoring in statistics. He is also part of the University Honors Program and is currently a peer mentor for UHP! He has a great interest in learning how biology intersects with statistics and learning how to apply statistical testing to determine what regions of the brain lead to psychiatric disorders. In his free time, he enjoys playing and watching tennis, reading manga, and listening to music.

Troy Haynes, Biotech undergrad

Troy is a second-year undergraduate student majoring in biotechnology, with an emphasis in bioinformatics. He has always been fascinated with the possibilities of computational biology, and hope to contribute to future advancements in medicine and drug discovery. Within his spare time, he enjoys practicing basketball and jiu jitsu, watching TV shows, and spending time with my friends and family.

Christie Ngo, Stats undergrad

Christie is a second year, undergraduate student majoring in statistics at UC Davis. She is interested in applying machine learning and statistical testing to human genetics and health-related data. In her free time, she enjoys listening to music, practicing photography, and trying out new desserts!

Albert Stanley, CS undergrad

Albert is a third-year undergraduate student majoring in Computer Science. He is interested in developing solutions to problems in biology through programming and machine learning models. In his free time, he enjoys playing basketball, spending time with friends and family, and playing on his drum set.

Rachit Sharma, CS undergrad

Rachit is a first year Computer Science student who is passionate about Machine Learning and Artificial Intelligence and the potential impacts they can have on many fields, especially biology. He is interested in eventually becoming a researcher or entrepreneur. In his free time, he likes to read books, play basketball with his friends, and learn new subjects.

Freyja

Frejya, lab mascot

 

Selected lab alumni

  • Jing Lyu, Biostatistics rotation student (Fall 2020)
  • Arielle Yoo, BMEG rotation student (Fall 2020)
  • Pouneh Bahrami, Computer Science Masters (Winter 2020-Spring 2020)
  • Kevin Lee, Cell Biology / Computer Science undergraduate (Fall 2019-Spring 2020)
  • Kelly Chau, Genetics and Genomics undergraduate intern (2019)
  • Phoebe (Biyang) Zhang, Statistics undergraduate intern (2018)
  • Yifan Chen, BME rotation student (Fall 2017)
  • Daniela Soto, IGG rotation student (Fall 2017)
  • Shu Zhang, Biostatistics Masters intern (Summer 2017)
  • Erjia Cui, Statistics undergraduate intern (Summer 2017)
  • Yizi Zhang, Neurobiology, Physiology and Behavior/Statistics undergraduate (Winter 2017)
  • Yimin Hu, CS undergraduate intern (Summer 2016)